Alison Cole, BSc MSc PhD
T: +43-1-4277-57008
Winter term 2025
300106 UE Analyses of single cell transcriptome data - Genome/transcriptome assembly and annotation
300302 UE Übung in Entwicklungsbiologie
Winter term 2024
300106 UE Analyses of single cell transcriptome data - Genome/transcriptome assembly and annotation
300302 UE Übung in Entwicklungsbiologie
1 - 14 out of 14
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Haillot E, Lebedeva T, Steger J, Genikhovich G, Montenegro JD, Cole AG et al. Segregation of endoderm and mesoderm germ layer identities in the diploblast Nematostella vectensis. Nature Communications. 2025 Aug 27;16(1):7979. doi: 10.1038/s41467-025-63287-4
Link O, Jahnel SM, Janicek K, Kraus J, Montenegro JD, Zimmerman B et al. Changes of cell-type diversity in the polyp-to-medusa metagenesis of the scyphozoan jellyfish
Aurelia coerulea (formerly sp.1). 2025 Feb 15. doi: 10.1101/2023.08.24.554571
Bergheim BG, Cole AG, Rettel M, Stein F, Redl S, Hess MW et al. Molecular dynamics of the matrisome across sea anemone life history. 2024. doi: 10.1101/2024.10.29.620203
Denner A, Steger J, Ries A, Morozova-Link E, Ritter J, Haas F et al. Nanos2 marks precursors of somatic lineages and is required for germline formation in the sea anemone
Nematostella vectensis. Science Advances. 2024 Aug 16;10(33):eado0424. ado0424. doi: 10.1126/sciadv.ado0424
Thiel D, Yañez Guerra LA, Kieswetter A, Cole AG, Temmerman L, Technau U et al. Large-scale deorphanization of Nematostella vectensis neuropeptide G protein-coupled receptors supports the independent expansion of bilaterian and cnidarian peptidergic systems. eLife. 2024 May 10;12:RP90674. doi: 10.7554/eLife.90674
Cole AG, Steger J, Hagauer J, Denner A, Ferrer Murguia P, Knabl P et al. Updated single cell reference atlas for the starlet anemone Nematostella vectensis. Frontiers in Zoology. 2024 Mar 18;21:8. Epub 2024 Mar 18. doi: 10.1186/s12983-024-00529-z
Cole AG, Hashimshony T, Du Z, Yanai I. Gene regulatory patterning codes in early cell fate specification of the C. elegans embryo. eLife. 2024 Jan 29;12:RP87099. Epub 2023. doi: 10.7554/eLife.87099.3
Stadtmauer D, Basanta S, Maziarz J, Cole A, Dagdas G, Rae Smith G et al. Comparative single cell analysis reveals complex patterns of cell type and cell signaling innovations at the fetal-maternal interface. bioRxiv. 2024. doi: 10.1101/2024.05.01.591945
Basanta S, Stadtmauer D, Maziarz J, McDonough-Goldstein C, Cole A, Dagdas G et al. Hallmarks of uterine receptivity predate placental mammals. bioRxiv. 2024. doi: 10.1101/2024.11.04.621939
Haillot E, Lebedeva T, Steger J, Montenegro Cabrera JD, Cole A, Technau U. Notch, β-catenin and MAPK signaling segregate endoderm and mesoderm in the diploblast Nematostella vectensis. bioRxiv : the preprint server for biology. 2024.
Cole AG, Jahnel SM, Kaul S, Steger J, Hagauer J, Denner A et al. Muscle cell-type diversification is driven by bHLH transcription factor expansion and extensive effector gene duplications. Nature Communications. 2023 Dec;14(1):1747. doi: 10.1038/s41467-023-37220-6
Link O, Jahnel SM, Janicek K, Kraus J, Montenegro JD, Zimmerman B et al. A cell-type atlas from a scyphozoan jellyfish<i>Aurelia coerulea</i>(formerly sp.1) provides insights into changes of cell-type diversity in the transition from polyps to medusae. 2023 Aug 26. doi: 10.1101/2023.08.24.554571
Steger J, Cole AG, Denner A, Lebedeva T, Genikhovich G, Ries A et al. Single-cell transcriptomics identifies conserved regulators of neuroglandular lineages. Cell Reports. 2022 Sept 20;40(12):111370. doi: 10.1016/j.celrep.2022.111370
Salamanca D, Schulreich SM, Cole AG, Wanninger A. Single-Cell RNA Sequencing Atlas From a Bivalve Larva Enhances Classical Cell Lineage Studies. Frontiers in Ecology and Evolution. 2022 Jan 26;9:783984. doi: 10.3389/fevo.2021.783984
1 - 14 out of 14
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Studies of Cnidarian cell-type diversity offer insights into the origins and evolution of cell types
Cole, A. (Speaker)
25 Jun 2024 → 28 Jun 2024
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Molecular fingerprinting sea anemones and jellyfish: a transcriptomic approach to characterize Cnidarian cell types
Cole, A. (Speaker)
22 Jul 2023
Activity: Talks and presentations › Talk or oral contribution › Science to Science
A cell-type atlas from a scyphozoan jellyfish Aurelia sp. provides insights into cell-type diversity and reveals conserved cell specification mechanisms across the Cnidaria
Cole, A. (Speaker)
7 Sept 2022 → 10 Sept 2022
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Cnidarian radiation of bHLH regulatory proteins facilitated the diversification of muscle cell types
Cole, A. (Speaker)
31 May 2022 → 3 Jun 2022
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Molecular fingerprinting sea anemones and jellyfish: a transcriptomic approach to characterize Cnidarian cell types
Cole, A. (Speaker)
7 May 2021
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Diploblastic sea anemones have distinct cell types with signatures reminiscent of bilaterian muscle
Cole, A. (Speaker)
16 Sept 2019
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Development and Homeostasis in a sea anemone: a multi-faceted approach to characterize Cnidarian stem cells
Cole, A. (Speaker)
17 Feb 2019 → 20 Feb 2019
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Department of Neuroscience and Developmental Biology
Djerassiplatz 1 (UBB)
1030 Wien
Room: 4.027
T: +43-1-4277-57008