Alison Cole, BSc MSc PhD
T: +43-1-4277-57008
Winter term 2024
300106 UE Analyses of single cell transcriptome data - Genome/transcriptome assembly and annotation
300302 UE Übung in Entwicklungsbiologie
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Bergheim BG, Cole AG, Rettel M, Stein F, Redl S, Hess MW et al. Molecular dynamics of the matrisome across sea anemone life history. 2024. doi: 10.1101/2024.10.29.620203
Denner A, Steger J, Ries A, Morozova-Link E, Ritter J, Haas F et al. Nanos2 marks precursors of somatic lineages and is required for germline formation in the sea anemone
Nematostella vectensis. Science Advances. 2024 Aug 16;10(33):eado0424. ado0424. doi: 10.1126/sciadv.ado0424
Thiel D, Yañez Guerra LA, Kieswetter A, Cole AG, Temmerman L, Technau U et al. Large-scale deorphanization of Nematostella vectensis neuropeptide G protein-coupled receptors supports the independent expansion of bilaterian and cnidarian peptidergic systems. eLife. 2024 May 10;12:RP90674. doi: 10.7554/eLife.90674
Cole AG, Steger J, Hagauer J, Denner A, Ferrer Murguia P, Knabl P et al. Updated single cell reference atlas for the starlet anemone Nematostella vectensis. Frontiers in Zoology. 2024 Mar 18;21:8. Epub 2024 Mar 18. doi: 10.1186/s12983-024-00529-z
Cole AG, Hashimshony T, Du Z, Yanai I. Gene regulatory patterning codes in early cell fate specification of the C. elegans embryo. 2024. Epub 2023. doi: 10.7554/eLife.87099.3
Stadtmauer D, Basanta S, Maziarz J, Cole A, Dagdas G, Rae Smith G et al. Comparative single cell analysis reveals complex patterns of cell type and cell signaling innovations at the fetal-maternal interface. bioRxiv. 2024. doi: 10.1101/2024.05.01.591945
Basanta S, Stadtmauer D, Maziarz J, McDonough-Goldstein C, Cole A, Dagdas G et al. Hallmarks of uterine receptivity predate placental mammals. bioRxiv. 2024. doi: 10.1101/2024.11.04.621939
Haillot E, Lebedeva T, Steger J, Montenegro Cabrera JD, Cole A, Technau U. Notch, β-catenin and MAPK signaling segregate endoderm and mesoderm in the diploblast Nematostella vectensis. bioRxiv : the preprint server for biology. 2024.
Cole AG, Jahnel SM, Kaul S, Steger J, Hagauer J, Denner A et al. Muscle cell-type diversification is driven by bHLH transcription factor expansion and extensive effector gene duplications. Nature Communications. 2023 Dec;14(1):1747. doi: 10.1038/s41467-023-37220-6
Link O, Jahnel SM, Janicek K, Kraus J, Montenegro JD, Zimmerman B et al. A cell-type atlas from a scyphozoan jellyfish<i>Aurelia coerulea</i>(formerly sp.1) provides insights into changes of cell-type diversity in the transition from polyps to medusae. 2023. doi: 10.1101/2023.08.24.554571
Steger J, Cole AG, Denner A, Lebedeva T, Genikhovich G, Ries A et al. Single-cell transcriptomics identifies conserved regulators of neuroglandular lineages. Cell Reports. 2022 Sept 20;40(12):111370. doi: 10.1016/j.celrep.2022.111370
Salamanca D, Schulreich SM, Cole AG, Wanninger A. Single-Cell RNA Sequencing Atlas From a Bivalve Larva Enhances Classical Cell Lineage Studies. Frontiers in Ecology and Evolution. 2022 Jan 26;9:783984. doi: 10.3389/fevo.2021.783984
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Studies of Cnidarian cell-type diversity offer insights into the origins and evolution of cell types
Alison Cole (Speaker)
25 Jun 2024 → 28 Jun 2024
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Molecular fingerprinting sea anemones and jellyfish: a transcriptomic approach to characterize Cnidarian cell types
Alison Cole (Speaker)
22 Jul 2023
Activity: Talks and presentations › Talk or oral contribution › Science to Science
A cell-type atlas from a scyphozoan jellyfish Aurelia sp. provides insights into cell-type diversity and reveals conserved cell specification mechanisms across the Cnidaria
Alison Cole (Speaker)
7 Sept 2022 → 10 Sept 2022
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Cnidarian radiation of bHLH regulatory proteins facilitated the diversification of muscle cell types
Alison Cole (Speaker)
31 May 2022 → 3 Jun 2022
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Molecular fingerprinting sea anemones and jellyfish: a transcriptomic approach to characterize Cnidarian cell types
Alison Cole (Speaker)
7 May 2021
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Diploblastic sea anemones have distinct cell types with signatures reminiscent of bilaterian muscle
Alison Cole (Speaker)
16 Sept 2019
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Development and Homeostasis in a sea anemone: a multi-faceted approach to characterize Cnidarian stem cells
Alison Cole (Speaker)
17 Feb 2019 → 20 Feb 2019
Activity: Talks and presentations › Talk or oral contribution › Science to Science
Department of Neuroscience and Developmental Biology
Djerassiplatz 1 (UBB)
1030 Wien
Room: 4.027
T: +43-1-4277-57008